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Question: Adding a tool in the galaxy browser
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gravatar for majhemajhe27
2.9 years ago by
majhemajhe27 • 0
Canada
majhemajhe27 • 0 wrote:

Hi everyone, my name is Samir. I am doing my PhD in Biochemistry at Universite de Montreal. I would like to add a tool called HiFive to my Galaxy browser to analyze 5C data. Do I have to install Galaxy locally in order to add a tool, or is there a way to do it on the web-based version? 
toolshed galaxy hi-c 5c hifive • 606 views
ADD COMMENT • link •
modified 2.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.9 years ago by majhemajhe27 • 0
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gravatar for Jennifer Hillman Jackson
2.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Install the tool from the Tool Shed in a local or cloud Galaxy. This analysis will probably take more compute than most personal computers can provide. A local server or Cloudman instance with more dedicated resources would be a good choice. AWS offers educational grants to help cover their costs when using a cloud - the application process is quick and painless. (Galaxy itself is always free).

https://wiki.galaxyproject.org/BigPicture/Choices

https://wiki.galaxyproject.org/Support#About_Galaxy

That said, publicly hosted Galaxy instances have the available tool set curated by the groups that run them, often targetted on a specific analysis workflow. You can review the list below to see if any offer the tools of interest (with sufficient data quota for the project) as a possible alternative.

https://wiki.galaxyproject.org/PublicGalaxyServers

Best, Jen, Galaxy team
ADD COMMENT • link written 2.9 years ago by Jennifer Hillman Jackson ♦ 25k

Hi Jen, thank you for your reply. I am relatively new to galaxy and bioinformatics in general. How do I load a tool into the cloud galaxy. I found the tool on toolshed, but I am not sure which type of file I am supposed to install, and where to install it. 

ADD REPLY • link written 2.9 years ago by majhemajhe27 • 0

Follow the instructions here for a local Galaxy: http://getgalaxy.org

If you decide to use a cloud Galaxy instead, see here: http://usegalaxy.org/cloud

In short, you set up an admin account on your instance then use specific admin functions to install tools. 

ADD REPLY • link written 2.9 years ago by Jennifer Hillman Jackson ♦ 25k
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