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Question: Add NCBI BLAST
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gravatar for cbb.chintan
3.2 years ago by
cbb.chintan • 10
United States
cbb.chintan • 10 wrote:

I am new to galaxy.

I did not configured my galaxy on any local machine.

I want to add NCBI BLAST +++ to my tools in homepage of galaxy.

 

How i can do it?

 

 

 

 
ncbi blast galaxy • 999 views
ADD COMMENT • link •
modified 3.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.2 years ago by cbb.chintan • 10
1
gravatar for Bjoern Gruening
3.2 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi,

have a look at this paper that describes the BLAST+ integration in Galaxy: http://www.gigasciencejournal.com/content/4/1/39

If you are admin you can install all wrappers via the Tool Shed. If you are not an admin you should contact them.

Cheers,

Bjoern 
ADD COMMENT • link written 3.2 years ago by Bjoern Gruening ♦ 5.1k

Hello,

I am facing other problem now. I installed galaxy as local galaxy using ubuntu in virtual box. I followed the james video and stuck in between. I lunched command sh run.sh and i got output as ~ middleware: /plugins/visualizations/scatterplot/static, ./config/plugins/visualizations/scatterplot/static galaxy.queue_worker INFO 2015-09-09 12:00:59,171 Binding and starting galaxy control worker for main Starting server in PID 4215. serving on http://127.0.0.1:8080 <http: 127.0.0.1:8080="">. then i moved to http://127.0.0.1:8080 <http: 127.0.0.1:8080=""> in my chrome and logged using my email id and password.

In video it shows that there will another tab "Admin" on top in line of Help etc., but i did not able to see like that even i refreshed many times.

Please find attached screenshot

Best, Chintan

ADD REPLY • link written 3.2 years ago by cbb.chintan • 10

You will only see the admin tab if you configure yourself as administrator. Edit the *admin_users* setting in config/galaxy.ini.

ADD REPLY • link written 3.2 years ago by Bjoern Gruening ♦ 5.1k

Thank you for reply. You are correct i had already added admin_users = cbb.chintan@gmail.com

I have also attached galaxy.ini file that is available in config folder.

please find attachment.

thanks, Chintan

ADD REPLY • link written 3.2 years ago by cbb.chintan • 10
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