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Question: Add A Tool
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gravatar for very
10.1 years ago by
very • 70
very • 70 wrote:
Hi, Currently, my tool only print out the result on screen. When I add it into galaxy I can't see the result. Do I have to write the result into a file and make the file name as one parameter when invoking the tool, so I can see result in galaxy?
galaxy • 651 views
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modified 10.1 years ago by Anton Nekrutenko ♦ 1.7k • written 10.1 years ago by very • 70
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gravatar for Anton Nekrutenko
10.1 years ago by
Anton Nekrutenko ♦ 1.7k
Penn State
Anton Nekrutenko ♦ 1.7k wrote:
You need to redirect into a file. In the example below this file is named "$out_file1": <tool id="myTool1" name="myTool"> <description>for doing somethiung</description> myTool.pl $input > $out_file1 <inputs> <param format="txt" name="input" type="data" label="Do something with this dataset"/> </inputs> <outputs> <data format="input" name="out_file1"/> </outputs> <help> Let us know if this does not help. anton galaxy team Anton Nekrutenko Asst. Professor Department of Biochemistry and Molecular Biology Center for Comparative Genomics and Bioinformatics Penn State University anton@bx.psu.edu http://nekrut.bx.psu.edu 814.865.4752
ADD COMMENT • link written 10.1 years ago by Anton Nekrutenko ♦ 1.7k
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