Question: Adding tools to a Galaxy server - Public URLs versus Private local/cloud Galaxies
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gravatar for hosseinkhan
2.2 years ago by
hosseinkhan • 0 wrote:

Dear all,

I am new to DNA methylation analysis. I want to use Galaxy and I have seen some tutorials using Galaxy for this purpose.

I know that I have to add minfi_tools to my galaxy. However I do not know how to do it.

I found some instructions but I do not understand what exactly should I do.

Can anybody explain to me how to add this tool in to galaxy?

Thank you in advance

Nazanin Hosseinkhan

ADD COMMENT • link • modified 2.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.2 years ago by hosseinkhan • 0

Are you an admin on your Galaxy server? If not, you can only install the minfi tool by asking the admin to do it for you.

ADD REPLY • link written 2.2 years ago by Devon Ryan • 1.9k

Thanks.

But I am not sure if I understood what you mean.

By "admin" you mean that I have registered in to Galaxy? if it is, yes,I have Galaxy account, but minfi_tools is not present in the list of tools. If not, how can I ask admin to do it for me?

Thanks again for your help

Nazanin

ADD REPLY • link written 2.2 years ago by hosseinkhan • 0
1

If you don't know what I mean then the answer is "no". You'll have to find out who runs the Galaxy instance you're using and ask that person. If you're using the main usegalaxy.org instance, then I guess this is as good a place as any to ask, though it'd be faster to just directly use R (there's relatively little support for microarrays in Galaxy).

ADD REPLY • link written 2.2 years ago by Devon Ryan • 1.9k
1
gravatar for Martin Čech
2.2 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

You can only add tools to Galaxy you control/own (are admin of) as Devon explained. The process is described here: https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial

ADD COMMENT • link written 2.2 years ago by Martin Čech ♦♦ 4.9k
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