Question: Adding plant genome browser to the galaxy
0
gravatar for d.angra
3.5 years ago by
d.angra50
United Kingdom
d.angra50 wrote:

Hi

I am wishing to add the plant genome browser to galaxy. I iniially thought about UCSC as it has many features whiah are very useful for my project. I didnt realise that it needs a developer to accomplish this task I am not one.

Could anybody please help me what steps should I be taking in this direction?

Hoping so.

Thanks 

Viva

 

 

ADD COMMENTlink modified 3.5 years ago • written 3.5 years ago by d.angra50
0
gravatar for Jennifer Hillman Jackson
3.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello Viva,

In Galaxy, this is quite simple. Use the Custom reference genome function including full indexing by creating a Custom Build. The visualization tool Trackster can then be used. This works for genomes, transcriptomes, exomes, etc. Full or partial. 

Best, Jen, Galaxy team

ADD COMMENTlink written 3.5 years ago by Jennifer Hillman Jackson25k
0
gravatar for d.angra
3.5 years ago by
d.angra50
United Kingdom
d.angra50 wrote:

Hello Jen,

Thankyou very much. I am trying to do it.

Viva

ADD COMMENTlink written 3.5 years ago by d.angra50
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