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Question: How to add a genome reference to Bowtie to galaxy project
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gravatar for morteza-sharifinia
3.9 years ago by
morteza-sharifinia • 30
Iran, Islamic Republic Of
morteza-sharifinia • 30 wrote:

I want to map an ostrich RNA-seq data with Bowtie. I want to know where can I find a genome reference for mapping and how can add to Bowtie of galaxy project. Is there a shortcut or a way to do it as quick as possible. Can I ask galaxy team to add it?
rna-seq galaxy • 1.1k views
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modified 3.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.9 years ago by morteza-sharifinia • 30
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gravatar for Jennifer Hillman Jackson
3.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Once you locate the reference genome of interest, upload it in .fasta format and use it as a Custom Reference genome. Full instructions including troubleshooting help for format are in our wiki here:

http://wiki.galaxyproject.org/Support#Custom_reference_genome

Thanks, Jen, Galaxy team
ADD COMMENT • link written 3.9 years ago by Jennifer Hillman Jackson ♦ 25k

Hello Jen

Thank you for any help

ADD REPLY • link written 3.8 years ago by morteza-sharifinia • 30
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