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• No chicken reference genome (galGal4) for Bowtie2 - map reads against reference genome
  Hi, I cannot find the chicken (galGal4) reference genome when I run Bowtie2 - map reads against ...
• RNASEQ analysis on genome not in database
  I need to do RNA seq analysis on viral genome that is not in database. Have mapped with Bowtie t...
• How do I get reference genome?
  There is no reference genome for leishmania in Bowtie2 tool - map reads against reference genome....
• built-in genome for HISAT2 not available
  I am trying to map fastq to mm9 genome using HISAT2. But the drop-down list of built-in genomes i...
• About Mapping Quality
  Hi all, I used TopHat to map RNA-Seq reads to genomes. In the output (.sam) file, the value of s...
• Can a genome that's been released be added so I can map against it
  Hi there, I will be mapping my RNAseq reads to a genome of interests soon. Mapping with Bowtie2 ...
• Listing genome reference
  Hi, I would like to map reads against genome reference but my genome of interest is not listed. I...
• Uploading other Reference genome
  Can I upload my own reference genome, i.e. Toxoplasma gondii to map RNAseq data to?
• mapping the genome
  How can I know how many reads are mapped? I used the tophat tool. and how can I know how many r...
• Map on Koi genome (cyprinus carpio)
  hi, I would like to map reads onto the Koi genome (Cyprinus carpio), genome assembly deposited i...
• Mapping
  Hi, I want to map a set of sequences (derived from RNA) against a bacterial genome. Unfortunatel...
• Reference Genome how does it validate
  I have a very basic question. We map the m-RNA sequence cDNA with the reference genome and then b...
• How do I add my own reference genome for mapping RNA-seq data
  How Do I Add my own reference genome for mapping RNAseq data? Below is the link for the referenc...
• How to upload a reference genome
  Hi!, I am a new user in the Galaxy project and I want to map my reads with a genome that is not i...
• Creating consensus sequence after mapping
  Greetings, I would like to know how to create contigs, or DNA consensus sequence after mapping t...
• Map With Bowtie
  Hi Colleagues, I mapped illumina sequences using Bowtie on Galaxy server, I could not locate the ...
• Mapping quality plot of BAM file
  I'm interested in a specific genome region, is there a way/tool to make trackster track/plot/hist...
• Rattus Norvegicus Reference Genome
  Hi I'm currently using the Galaxy pipeline to analyze my illumina chip-seq data. When I try to u...
• Bowtie mapping has a unmapped gap on chromosome 6
  Hi, Recently, I used Galaxy Bowtie to map my ChIP-seq data to human genome, However, I saw a big ...
• mapping sanger sequencing files
  I have over 600 ab1 files generated by sanger sequencing. they represent different splicing forms...
• Hg19 With Rcrs
  Dear Galaxy,Before the new modifications, i was using hg19 human genome with the rCRS mitochondr...
• Bowtie for Illumina using reference genome of pisifera oil palm tree
  How I can map reads against pisifera oil palm tree genome or against scaffolds? Thank you for a ...
• clear overrepresented reads that arent adaptadors
  I am working in galaxy and I mapped the sequences with a genome of reference but the result show ...
• Bowtie mapping result
  Hello, I used "Map with Bowtie for Illumina" tool to map the sequences reads to the reference ge...