Similar posts • Search »

• How do I get reference genome?
  There is no reference genome for leishmania in Bowtie2 tool - map reads against reference genome....
• type of file for reference genome
  i want to use a reference genome for tophat. Which type of file the galaxy will recognize?
• No chicken reference genome (galGal4) for Bowtie2 - map reads against reference genome
  Hi, I cannot find the chicken (galGal4) reference genome when I run Bowtie2 - map reads against ...
• Uploading other Reference genome
  Can I upload my own reference genome, i.e. Toxoplasma gondii to map RNAseq data to?
• Listing genome reference
  Hi, I would like to map reads against genome reference but my genome of interest is not listed. I...
• HISAT2 reference genome unobtainable
  Trying to use HISAT2 - no reference genomes are available, how should I report this? Many thanks,...
• tophat reference genome
  Kindly add the genome of Pinus taeda and Picea glauca to the tophat reference genome as I am unab...
• Error using Diamond
  I have trying to use Diamond in meta genomic analysis but unable to choose reference genome
• How to upload a reference genome
  Hi!, I am a new user in the Galaxy project and I want to map my reads with a genome that is not i...
• why do Galaxy have a reference genome of sheep?
  Hi: I am analyzing RNA-seq data of sheep using Galaxy. But I can not find a reference genome abou...
• SacCer3 reference genome for SnpEff
  I saw that there was a ticket made in Trello (15 months ago) to add the SacCer3 reference genome ...
• Other reference genomes not listed
  Hello, I really like Galaxy tool but I have the problem that it does not contain the reference g...
• Adding reference genome to Galaxy
  Hi, I want to add reference genome(hg19) from UCSC main table to my Galaxy account,how can I do t...
• Reference Genome how does it validate
  I have a very basic question. We map the m-RNA sequence cDNA with the reference genome and then b...
• Tophat can't see the build-in reference genome?
  I successfully fetch an hg19 and build an bowtie2 index with Data managers. Bowtie2 can see the r...
• HISAT2 - no reference genome available
  HISAT2 does not have any options for a built-in reference genome. I need mm10. Source for the r...
• Addition of Rickettsia prowazekii to Bowtie2 reference genome list
  Can the Galaxy team incorporate Rickettsia prowazekii Madrid E (NC_000963.1) into the reference g...
• GATK tools and reference genomes
  The GATK tools are present as a beta version, and I tried to use selection or filtration, and the...
• Galaxy GATK no reference genome availiable
  I would like to try the NGS: GATK Tools (beta) in usegalaxy.org, but there is no available refere...
• Add a reference genome
  Dear Mr./Ms., I just want to use HISAT in RNA-Seq, and I want to use Pseudomonas aeruginosa ...
• How do I add my own reference genome for mapping RNA-seq data
  How Do I Add my own reference genome for mapping RNAseq data? Below is the link for the referenc...
• No reference genomes on galaxy hisat2
  I am trying to do rnaseq analysis but galaxy doesn't seem to have any reference genomes on hisat2...
• Mycoplasma Pneumoniae M129 And Fh Reference Genome
  Hello! I noticed that Mycoplasma pneumonia M129 and FH are not found in the refe...