Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Cannot select the S. cerevisiae reference genome (sacCer3) for "Map with Bowtie for Illumina" in a saved workflow
0
gravatar for harry_12345
4.3 years ago by
harry_12345 • 0
United Kingdom
harry_12345 • 0 wrote:

I have a saved workflow involving a Map with Bowtie for Illumina step in which I want to map reads to the S cerevisiae reference genome sacCer3. This reference genome is an option when you normally run this step not in a workflow. When I edit or run this workflow I cannot select this option (it is not available) and it reverts back to the default arabidopsis genome. How do I get this sacCer3 option added when this step is edited in a workflow?
bowtie • 1.2k views
ADD COMMENT • link •
modified 4.3 years ago by Wolfgang Maier • 600 • written 4.3 years ago by harry_12345 • 0
1
gravatar for Wolfgang Maier
4.3 years ago by
Wolfgang Maier • 600
Germany
Wolfgang Maier • 600 wrote:

You need to re-edit your workflow.

choose the "Edit" option for your workflow, then, in the graphical display, select the "Map with Bowtie for Illumina" box and, in the configuration tab on the right, click on the downward arrow next to "Select a reference genome:".

Now choose the option "Set at runtime".

Cheers,

Wolfgang
ADD COMMENT • link written 4.3 years ago by Wolfgang Maier • 600
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 171 users visited in the last hour