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• How do I get reference genome?
  There is no reference genome for leishmania in Bowtie2 tool - map reads against reference genome....
• built-in genome for HISAT2 not available
  I am trying to map fastq to mm9 genome using HISAT2. But the drop-down list of built-in genomes i...
• Listing genome reference
  Hi, I would like to map reads against genome reference but my genome of interest is not listed. I...
• Tuxedo_Custome build genome
  I have uploaded tomato genome in GFF3 and FASTA format in galaxy. However, when I run Tuxedo, my ...
• type of file for reference genome
  i want to use a reference genome for tophat. Which type of file the galaxy will recognize?
• How do I associate a genome with a BAM file?
  I aligned some RNA-Seq reads to a genome sequence using tophat2 and now cuffdiff complains that t...
• Error using Diamond
  I have trying to use Diamond in meta genomic analysis but unable to choose reference genome
• tophat reference genome
  Kindly add the genome of Pinus taeda and Picea glauca to the tophat reference genome as I am unab...
• Add Tribolium Genome
  I thought that the genome sequence for Tribolium castaneum (Tcas3.0) was in the genome pull-down,...
• Alignment of entire bacterial genomes
  How entire genomic alignment of bacterial species can be carried out????? I have added ten genom...
• Pipeline annotate genome
  Hi  evreyone  i am  beginner in bioinforantique  i want to know what  is  the  Pipeline to use  f...
• Genome build accession for Galaxy build-in genomes
  How can I find exact genome build (NCBI accession number, like GCA_000001405.17) for build-in gen...
• adding genomes in igb
  Hi, I am trying to visualize the streptomyces hygroscopicus genome on igb. But IGB doesn't have ...
• How to upload a reference genome
  Hi!, I am a new user in the Galaxy project and I want to map my reads with a genome that is not i...
• RNASEQ analysis on genome not in database
  I need to do RNA seq analysis on viral genome that is not in database. Have mapped with Bowtie t...
• using an imported genome
  How do I format an imported genome fasta file so that I can use it as the database for BEDtools f...
• SnpEff supports only genomes of two species?
  Under usegalaxy, I was trying to use SnpEff to annotate my VCF, but the genome dropdown list show...
• SacCer3 reference genome for SnpEff
  I saw that there was a ticket made in Trello (15 months ago) to add the SacCer3 reference genome ...
• Hg19 With Rcrs
  Dear Galaxy,Before the new modifications, i was using hg19 human genome with the rCRS mitochondr...
• No chicken reference genome (galGal4) for Bowtie2 - map reads against reference genome
  Hi, I cannot find the chicken (galGal4) reference genome when I run Bowtie2 - map reads against ...
• Uploading other Reference genome
  Can I upload my own reference genome, i.e. Toxoplasma gondii to map RNAseq data to?
• No genome of Solenopsis invicta in galaxy
  Hello, there is no genome of fire ants Solenopsis invicta. How can I do for that? Could anybody ...
• Create a BedGraph of genome coverage
  Hello! Excuse me, where can I find "Create a BedGraph of genome coverage" tool?