Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: SnpEff supports only genomes of two species?
0
gravatar for BC357
3.8 years ago by
BC357 • 70
United States
BC357 • 70 wrote:

Under usegalaxy, I was trying to use SnpEff to annotate my VCF, but the genome dropdown list shows only the genomes from C. elegans and Brachypodium, No genome of any version for homo sapiens ?? Is there no way to include human genomes in SnpEff on the main page?
snpeff • 864 views
ADD COMMENT • link •
modified 3.8 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.8 years ago by BC357 • 70
0
gravatar for Jennifer Hillman Jackson
3.8 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

These are the only two genomes currently supported on the public Main Galaxy instance. I do not believe that there are active plans to add more genomes, but this could change. 

For now, if you wish to use the tool with alternate genomes, then a local or cloud Galaxy is the best path. 
http://wiki.galaxyproject.org/Support#About_Galaxy

Thanks, Jen, Galaxy team
ADD COMMENT • link written 3.8 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 168 users visited in the last hour