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• Trinity - De novo transcriptome assembly
  Jobs submitted to Trinity for de novo assembly at Galaxy main hang in "This job is waiting to run...
• definition of "KmerAlignCore" in Trinity assembly
  Hi Could you please let me know about definition of "KmerAlignCore" in Trinity assembly?
• Long queue time for Trinity?
  I’ve had all my Trinity assembly jobs queued for several days, any idea when these might start ru...
• Trinity Error, job did not complete
  Hello, I asked a question last week regarding my Trinity assembly. It would not start the run (a...
• Trinity
  I want to run Trinity on the "test" instance of Galaxy, but there seems to be a problem. The anal...
• Trinity assembly occuring but result coming empty..
  Hello there, I am facing a serious issue now...for many days I am trying to denovo assemble my tr...
• Trinity "Exceeded step memory limit" error?
  Hi, I'm trying to assemble a de novo transcriptome using ~270 million paired end reads in Trinit...
• Trinity, Unicycler Job Error "Remote job server indicated a problem running or monitoring this job."
  When attempting Trinity assemblies with Trimmomatic paired end files, the run fails and I receive...
• Trinity jobs on hold for four days
  Hi everybody, Is there anything wrong with the Trinity De Novo RNA-Seq assembly? I submitted my j...
• Probem with the Trinity de-novo assembly for big dataset (128GB)
  I had 48 paired end samples, I concatinae all the 24 forward and reverse paired separately and tr...
• Trinity job not running
  Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired...
• problem with Trinity
  Good morning In this moment I have a job in Galaxy and I need assembly RNA-seq, but when I run t...
• Assembly tools will not run
  I am trying to run the Unicycler assembler on a fastq paired-end dataset (groomed and joined or u...
• Trinity is not working
  Trinity tool is not working. Is something wrong with the algorithm? When will it be available? Is...
• Job waiting to run (Trinity)
  Hi, I’m a new user of Galaxy. I’m just trying to run a De novo Assembly with Trinity. It’s been ...
• Trinity with multiple datasets
  Hello, I am running trinity on 4 data sets (2 left reads, 2 right reads) and I want it to be com...
• Transcriptome assembly with Trinity-Jaccard_Clip
  Dear all May I implement a transcriptome assembly using the parameter --jaccard_clip in the wr...
• Trinity run ended with error
  Hello, My trinity run ended with an error saying "tool error An error occurred with this dataset...
• Another step to make Trinity output usable with Blast
  I have an output from Trinity that looks like an assembled genome. When I use Blast to check for ...
• Is Trinity currently working?
  I'm trying to run Trinity but keep receiving the following error message: "Remote job server indi...
• Quality of assembly
  Hello After having performed the trinity job I have got a file of about 36,000 sequences now I w...
• JOB WAITING TO RUN
  I have been trying to run a Trinity job for two days and it hang with the "waiting to run" status...
• Unicycler and Trinity -- Unavailable 10/22-10-26 for scheduled maintenance. Please leave queued jobs queued.
  Hello I was trying to create assembly with Unicylcer, but the analysis does not start. Usually it...