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Question: is mothur tool working ?
0
gravatar for vtrevino
15 months ago by
vtrevino • 30
vtrevino • 30 wrote:

I tried to use mothur fastq.info) and I got an library access error:

Fatal error: Exit code 127 () mothur: error while loading shared libraries: libboost_iostreams.so.1.57.0: cannot open shared object file: No such file or directory mothur: error while loading shared libraries: libboost_iostreams.so.1.57.0: cannot open shared object file: No such file or directory

Is it a problem with UseGalaxy.org ?
mothur • 579 views
ADD COMMENT • link •
modified 14 months ago by Jennifer Hillman Jackson ♦ 25k • written 15 months ago by vtrevino • 30
0
gravatar for Saskia Hiltemann
15 months ago by
Saskia Hiltemann • 70
Saskia Hiltemann • 70 wrote:

Note: somebody else reported an issue with boost in relation to mother to me today and for them it was due to the order of conda channels (bioconda had to come before conda-forge) ..no clue if it could be the same on usegalaxy but could be something to check/a place to start
ADD COMMENT • link modified 15 months ago • written 15 months ago by Saskia Hiltemann • 70
0
gravatar for Jennifer Hillman Jackson
14 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Update: The Mothur tools were just corrected at Galaxy Main (https://usegalaxy.org). Details: https://biostar.usegalaxy.org/p/24985/#25076

ADD COMMENT • link written 14 months ago by Jennifer Hillman Jackson ♦ 25k

I got the same error on my local Galaxy? All Mothur tools was installed ok and green. How can I fix the issue?

ADD REPLY • link written 13 months ago by vebaev • 130

The problem might be the same as the one Saskia mentions and that Nate also used to solve the problem at https://usegalaxy.org (see the linked ticket for details).

Maybe compare your installed packages to the log posted for Main? Then install what is needed or delete, reset your conda dependency resolvers and try the install again that way?

ADD REPLY • link modified 13 months ago • written 13 months ago by Jennifer Hillman Jackson ♦ 25k

I will try. How exactly to reset conda dependances as I'm not so into the Galaxy inside kitchen :)

ADD REPLY • link written 13 months ago by vebaev • 130
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