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• Warning Message
  I'm having issues with the FASTQ_Groomer. What I have done it first I downloaded an SRA file crea...
• Tool failure that reports: AttributeError: 'module' object has no attribute 'ICM'
  Hi, I want to run Tuxedo2 workflow associating cufflinks with a gtf annotation file. TopHat se...
• Lost History Panel
  This again is with Galaxy2.2test My history panel was replaced by a large Server Error message, ...
• Metadata error while mapping with bowtie in galaxy
  ChIP seq files sequenced in Sanger / illumina 1.9, when processed for mapping with Bowtie for Ill...
• Re: Thanks For The Answer
  Hi Anton and the galaxy group, Tests of the ENCODEdb connection on the galaxy test site as Anton...
• Cuffdiff crashing suddenly
  Hello, I'm running cuffdiff and this error comes up when it runs. Fatal error: Matched on e...
• Error With Encodedb
  ENCODEdb queries don't work well. Here's the error message generated: error, format: interval, d...
• Can Remote_User Be Changed To Another Header Variable?
  Hi, We have a SSO environment provided by Oracle Fusion products and for some reason, they don't...
• SNPeff datatype not available in Toolshed
  Hi Guys, When I restarted our Galaxy server I noticed a warning that the snpEff datatype couldn'...
• Cuffdiff Fatal error: Matched on error
  Hello, I am doing my first RNA seq data analysis using galaxy. I have assembled my transcripts u...
• April 8, 2011 Galaxy Development News Brief
  April 8, 2011 Galaxy Development News Brief http://bitbucket.org/galaxy/galaxy- central/wiki/Fea...
• Gff Parsing With Biopython
  Hi, I have the following GFF file from a SNAP X1 SNAP Einit 2579 2712 -3.221 +...
• Attribute error when running some tools after updating to galaxy 17.05
  Dear Galaxy Community, I recently update my cluster-oriented local instance of Galaxy from versi...
• Conflict There was a conflict when trying to complete your request. Error generating display_link: type object 'Bam' has no attribute 'name'
  Good afternoon, I keep getting the following error when trying to visualise data using galaxy ma...
• merge collections into single list of dataset tool
  I am getting the following error Error executing tool: 'HistoryDatasetAssociation' object has n...
• Tool errors with private instance of Galaxy on Jetstream
  Hello community, I manage a NGS core lab and also teach a grad level intro to Bioinformatics cou...
• Adding new DataProvider for JSON
  My goal is to read a JSON file from History into a JS script (for visualization puposes). The mak...
• Workflow input dataset
  There is an error in the galaxy input datasets in the workflow. First I thought it was me but now...
• Internal Server Error for workflow
  Hello I am getting following error when I try to run the workflow from my admin account. my lin...
• Galaxy Main - Files Not Found, Server Error
  Hello, I am getting a resource not found error when I try to view data on the Galaxy Main Server...
• Galaxy With Python2.6
  Will galaxy source be updated to be compatible with python 2.6? The README.txt file stats that i...
• Galaxy tool development - how do I get a working samtools?
  I'm trying to develop a Galaxy tool that has samtools 1.5 as a dependency, but nothing I declare ...
• AttributeError: 'Configuration' object has no attribute 'tool_sheds_config'
  I set up a local galaxy instance. I run well before, but then I got an error: AttributeError: '...