Question: Variant Calling Free Bayes BamLeftAlign
0
gravatar for kry_8
10 months ago by
kry_810
kry_810 wrote:

When trying to run Galaxy on the platform I keep having the same error message when using FreeBayes and BamLeftAlign

Fatal error: Exit code 1 () freebayes: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory

Fatal error: Exit code 127 () bamleftalign: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory

ADD COMMENTlink modified 10 months ago • written 10 months ago by kry_810
1
gravatar for Jennifer Hillman Jackson
10 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This is recently discovered problem with the Freebayes tools (this one included) and we are still working on the correction. Please see the issue tracking ticket for the workaround (use an earlier tool version). When the dependencies are fixed, the ticket will be updated/closed out.

https://github.com/galaxyproject/usegalaxy-playbook/issues/79

Thanks for reporting the problem! Jen, Galaxy team

ADD COMMENTlink written 10 months ago by Jennifer Hillman Jackson25k
0
gravatar for kry_8
10 months ago by
kry_810
kry_810 wrote:

Thanks!!!! Sorry to be annoying but what about: Exit code 127 () bamleftalign: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory

ADD COMMENTlink written 10 months ago by kry_810
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 170 users visited in the last hour