Hi,
I am new to galaxy and trying to develop a visualisation plugin. I have downloaded a local galaxy.
1) I have config galaxy.ini file:
admin_users = myemail@gmail.com
visualization_plugins_directory = config/plugins/visualizations
2) changed datatypes_conf.xml.sample to datatypes_conf.xml
3) Created folder structure under config/plugins/visualizations
folder name (protviewer), xml name (protviewer.xml) and mako(protviewer.mako) names are same
4) created config file protviewer.xml
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
<visualization name="ProtViewer">
<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test>
<to_param param_attr="id">dataset_id</to_param>
</data_source>
</data_sources>
<params>
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
</params>
<entry_point entry_point_type="mako">protviewer.mako</entry_point>
</visualization>
5) Created protviewer.mako file (for testing purpose I have only basic HTML)
<!DOCTYPE html>
<html>
<head>
<title>Page Title</title>
</head>
<body>
<h1>This is a Heading</h1>
<p>This is a paragraph.</p>
<h2>${hda.dataset.datatype} | ${hda.name}</h2>
</body>
</html>
Output of console
galaxy.web.base.pluginframework INFO 2016-03-02 08:09:22,836 VisualizationsRegistry, loaded plugin: charts
galaxy.visualization.plugins.config_parser INFO 2016-03-02 08:09:22,838 Visualizations plugin disabled: Circster. Skipping...
galaxy.visualization.plugins.config_parser INFO 2016-03-02 08:09:22,845 template syntax is deprecated: use entry_point instead
galaxy.web.base.pluginframework INFO 2016-03-02 08:09:22,845 VisualizationsRegistry, loaded plugin: csg
galaxy.web.base.pluginframework INFO 2016-03-02 08:09:22,848 VisualizationsRegistry, loaded plugin: graphview
galaxy.visualization.plugins.config_parser INFO 2016-03-02 08:09:22,850 template syntax is deprecated: use entry_point instead
galaxy.web.base.pluginframework INFO 2016-03-02 08:09:22,850 VisualizationsRegistry, loaded plugin: graphviz
galaxy.web.base.pluginframework INFO 2016-03-02 08:09:22,853 VisualizationsRegistry, loaded plugin: phyloviz
galaxy.web.base.pluginframework INFO 2016-03-02 08:09:22,854 VisualizationsRegistry, loaded plugin: protviewer
galaxy.web.base.pluginframework INFO 2016-03-02 08:09:22,856 VisualizationsRegistry, loaded plugin: scatterplot
galaxy.visualization.plugins.config_parser INFO 2016-03-02 08:09:22,858 Visualizations plugin disabled: Sweepster. Skipping...
galaxy.web.base.pluginframework INFO 2016-03-02 08:09:22,862 VisualizationsRegistry, loaded plugin: trackster
But still I do not see visualisation icon for tabular format file. Not only my visualisation, other visualisation also not working. Do you have any idea why?
Thanks
