Hi,
I'm having a problem with using charts on my local galaxy installation. When I click on the visualization icon and select charts, I get a blank screen. See below for relevant lines from the "paster.log" file:
galaxy.webapps.galaxy.controllers.visualization ERROR 2015-11-03 09:31:18,759 error rendering visualization (charts): (SyntaxError) invalid syntax (<unknown>, line 7) (u"h.js( 'libs/jquery/jquery',\n 'libs/") in file 'config/plugins/visualizations/charts/templates/charts.mako' at line: 14 char: 9
Traceback (most recent call last):
File "/opt/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/visualization.py", line 732, in render
return plugin.render( trans=trans, embedded=embedded, **kwargs )
File "/opt/galaxy-dist/lib/galaxy/visualization/plugins/plugin.py", line 139, in render
return self._render( render_vars, trans=trans, embedded=embedded )
File "/opt/galaxy-dist/lib/galaxy/visualization/plugins/plugin.py", line 238, in _render
return trans.fill_template( template_filename, template_lookup=self.template_lookup, **render_vars )
File "/opt/galaxy-dist/lib/galaxy/web/framework/webapp.py", line 810, in fill_template
return self.fill_template_mako( filename, **kwargs )
File "/opt/galaxy-dist/lib/galaxy/web/framework/webapp.py", line 818, in fill_template_mako
template = template_lookup.get_template( filename )
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/lookup.py", line 218, in get_template
return self._load(srcfile, uri)
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/lookup.py", line 283, in _load
**self.template_args)
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py", line 218, in __init__
module = self._compile_from_file(path, filename)
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py", line 244, in _compile_from_file
path)
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/template.py", line 507, in _compile_module_file
node = lexer.parse()
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/lexer.py", line 209, in parse
if self.match_expression():
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/lexer.py", line 369, in match_expression
lineno=line, pos=pos)
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/lexer.py", line 125, in append_node
node = nodecls(*args, **kwargs)
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/parsetree.py", line 172, in __init__
self.code = ast.PythonCode(text, **self.exception_kwargs)
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/ast.py", line 34, in __init__
expr = pyparser.parse(code.lstrip(), "exec", **exception_kwargs)
File "/opt/galaxy-dist/eggs/Mako-0.4.1-py2.6.egg/mako/pyparser.py", line 60, in parse
), **exception_kwargs)
SyntaxException: (SyntaxError) invalid syntax (<unknown>, line 7) (u"h.js( 'libs/jquery/jquery',\n 'libs/") in file 'config/plugins/visualizations/charts/templates/charts.mako' at line: 14 char: 9
Thank you for reporting this. Can you specify the revision and branch you are using?
I'm currently using 15.07 via mercurial
I have tried this in 15.10 now with the same result