HEY guys,
I have got some problems.I want to add a tool into galaxy.But following the xml below,what I get is always tac $input.
It cannot distinguish -b,-r.And I also do not know how to make -s string run in it.So I would like you to recommand me some materials to read,and figure out how it works.
<tool id="tac1" name="tac datasets">
<description>tail-to-head</description>
<command>
<![CDATA[
tac
-b
-r
$input1
> $out_file1
]]>
</command>
<inputs>
<param name="input1" type="data" label="Tac Dataset"/>
<param name="delimiter" type="select" label="Delimited by">
<option value="N">Null</option>
<option value="B">-b</option>
<option value="R">-r</option>
<option value="S">-s</option>
</param>
</inputs>
<outputs>
<data name="out_file1" format="input" metadata_source="input1"/>
</outputs>
<tests>
<test>
<param name="delimiter" value="N"/>
<param name="input1" value="1.bed"/>
<output name="out_file1" file="tac_wrapper_out1.bed"/>
</test>
<!--TODO: if possible, enhance the underlying test code to handle this test
the problem is multiple params with the same name "input2"
<test>
<param name="input1" value="1.bed"/>
<param name="input2" value="2.bed"/>
<param name="input2" value="3.bed"/>
<output name="out_file1" file="cat_wrapper_out2.bed"/>
</test>
-->
</tests>
</tool>
