Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: for viral metagenomics
0
gravatar for reach2anamika
4.4 years ago by
reach2anamika • 10
United States
reach2anamika • 10 wrote:

I want to mapmy illumina reads to the viral genome database. Please give me the workflow for this. 

In the Blastx there is an option to map only to the viral database within the nr database.
galaxy • 935 views
ADD COMMENT • link •
modified 4.4 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.4 years ago by reach2anamika • 10

Are you using your own Galaxy instance or a public one?

ADD REPLY • link written 4.4 years ago by Bjoern Gruening ♦ 5.1k

I am using the public one.

ADD REPLY • link written 4.4 years ago by reach2anamika • 10
0
gravatar for Jennifer Hillman Jackson
4.4 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The Megablast tool (blastn) on the public Main Galaxy instance at http://usegalaxy.org has a fixed set of target databases.

However, you can install and use either Megablast or BLAST+ on a suitable local or cloud Galaxy instance with the target database of your choice. Here are some links to get started:

http://usegalaxy.org/toolshed
http://wiki.galaxyproject.org/BigPicture/Choices

Good luck! Jen, Galaxy team
ADD COMMENT • link written 4.4 years ago by Jennifer Hillman Jackson ♦ 25k

Thank you.I will try them.

ADD REPLY • link written 4.4 years ago by reach2anamika • 10
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 170 users visited in the last hour