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Question: adding data_source manual
1
gravatar for Torsten Houwaart
3.7 years ago by
Torsten Houwaart • 50
Germany
Torsten Houwaart • 50 wrote:

Hello,

we want to try and bring some RNA related databases as a data source to our Galaxy instance. To add a data_source Galaxy-side seems to be easy enough, but does anybody have a manual, a checklist or something what has to be done on the database side?

Best,

Torsten H.
data_source galaxy • 754 views
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modified 3.6 years ago • written 3.7 years ago by Torsten Houwaart • 50
4
gravatar for Torsten Houwaart
3.6 years ago by
Torsten Houwaart • 50
Germany
Torsten Houwaart • 50 wrote:

Hi Jen,

thank you for the reply but that was not exactly what I meant.

I have since worked a bit more on this issue and was successful in implementing a small example server. On the following gist page I have put the files that were necessary to achieve this

  • a CherryPy server which can communicate with a Galaxy instance both synchronously and asynchronously
  • the corresponding xml files which have to be put as usual in "path-to-galaxy-root/tools/data_source" folder
  • a detailed description (slightly more detailed than what I was able to find)

https://gist.github.com/TorHou/b4ee6890442c5c3d479d

Best,

Torsten
ADD COMMENT • link modified 3.6 years ago • written 3.6 years ago by Torsten Houwaart • 50
0
gravatar for Jennifer Hillman Jackson
3.7 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Please see this wiki and those linked from it. 
http://wiki.galaxyproject.org/Admin/DataPreparation

Best, Jen, Galaxy team

 
ADD COMMENT • link written 3.7 years ago by Jennifer Hillman Jackson ♦ 25k
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