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• converting .sra file to fastq file
  Is there anyway to integrate SRA toolkit into Galaxy? I am trying to analyze raw sra files from G...
• SRA conversion program
  How do I convert an SRA file to a fastq or fasta formatted file? I do not see that option in the...
• Extract reads in FASTQ/A format from NCBI SRA
  Hi. I downloaded an SRA accession. In the results, the spots were separated but is in the same fi...
• How to convert SRA Files to FASTAQ files in a 32 BIt windows computer ( beginner here)
  How to convert SRA Files to FASTAQ files in a 32 BIt windows computer ( beginner here)
• How to fix fastq-dump-paired tool can't fetch SRA file from accession number?
  How to fix fastq-dump-paired tool can't fetch SRA file from accession number? Tried several versi...
• NCBI SRA Tool Importer can't import a list
  I am having trouble importing lists of SRA accession numbers using the NCBI SRA Tools. I am using...
• uploading data from nsci sra
  Hi,   I want to compare 15 files uploaded on nsbi sra server. Is it possible to give links from...
• Lading SRA files into Galaxy
  I have been trying to load SRA files into Galaxy. I have tried using SRA tools, EBI download and...
• Sra Files On Galaxy
  Greetings Galaxy team, Are there any plans for Galaxy to be able to deal with SRA files? NCBI no...
• sra data from ncbi
  hi on clicking the link get data- ebi sra i am directed to the ebi website. after finding my sra ...
• Unzip files on Galaxy
    Hello, I have a fastq.gz file downloaded from SRA that need unzipped. How can I do this on Ga...
• How do you load GEO data into Galaxy
  how do i load files from GEO? these are compressed files of either SRA or TAR files.
• How to annotate 500 vcf files using SNPEff or smth else and put every separate result in a folder with the name of the SRA identifier?
  How to annotate 500 vcf files using SNPEff or smth else and put every separate result in a folder...
• How to use and program Galaxy to download 300 SRA files at once form the NIH database?
  How to use and program Galaxy to download 300 SRA files at once form the NIH database? We need to...
• tophat sra rna seq
  i have sra files from ncbi sra tools i have in my galaxy history. on using tophat i am unable to ...
• Helicos sequencing data
  I've downloaded a set of SRA files containing Helicos sequencing data.  Are there any tools on Ga...
• Decompression of sra files and further analysis
  Case: 05508803 Dear Jen, Thanks that you are trying to help me. How can I uncompress the thre...
• How do I process multiple pileup files at once with Varscan to get the vcf files?
  I have a list of 100 SRA IDs for which I need to get the VCF files using VARSCAN. VARSCAN takes...
• Fastq-Dump On Sra Files From Ncbi
  Is it possible to upload files from the NCBI sra data base, then use fastq-dump from the sra tool...
• SRA files could not retrieved from EBI SRA
  Dear Galaxy Team, There seems to be a persistent problem with importing fastq files from EBI SRA...