Question: Queue Rules For Multi-Step Workflows
0
zuzmus • 10 wrote:
Dear Galaxy managers,
I would like to ask about the queuing rules for the workflows before
processed on the server?
I use my customized Galaxy workflow which contains 22 following steps
(basically, filtering, trimming and format change of NGS data). I
guess the
server is generally very busy during last weeks/months (?), so my job
was
waiting about 24 hours in a queue (which would not be a problem), and
then
the first step of the workflow was processed, but the following 21 is
again/still waiting (already for another couple of hours...). It makes
me
wondering about the queuing rules because I expected that the whole
workflow is queued as one job.. Then my question is if the whole
workflow,
once submitted, is listed in the queue, or does the following step
queue
only after the previous step is finished (which would mean to wait the
whole queue for each step of the workflow...)?
I routinely used those wrokflows before (months ago) without any
problems...
I tried to search similar question in the archive before I posted this
one...
Thanks a lot for your answer,
My best
Zuzana Musilova
--
Zuzana Musilova, PhD.
(zuzmus@gmail.com)
Zoological Institute
University of Basel
Vesalgasse 1, CH-4051 Basel
Switzerland - Europe
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modified 5.2 years ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
5.4 years ago by
zuzmus • 10