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• Cufflinks Jobs In Queue
  Hi, My cufflinks jobs sat in the queued state for 12+ hours so I restarted them this morning. Th...
• Bowtie Alignment
  Hello, I am trying to map my Illumina reads to the mouse genome using specific Bowtie criteria. ...
• Galaxy incredibly slow
  I have used Galaxy via the web successfully in the past. Now, when I run jobs, it says they are r...
• Galaxy datasets queued for a long time
  Hello, My datasets have stopped running from yesterday and are now grey in colour (queued) for ...
• Megablast still queued
  Tried a megablast of nt for some metagenomic work.  It was still in queue one hour later so I del...
• Uploading small files are queued for hours
  Hi !    I've been trying to upload files via the FTP server 9.fna and .gff file). Every time it...
• Tophat not executing
  Tophat doesn't seem to be executing on usegalaxy.org. The jobs are being queued, but they haven't...
• Problems with Galaxy histories
  Hy everyone, I have some problems with Galaxy histories. I launched my histories last friday and ...
• After 'Trim Sequences', 'Map W/Bowtie' Job Has Been Waiting For Days To Run
  Greetings, I am using Galaxy Main; On 8/1/2013, and after 'trimming sequences' on my 'FASTQ groom...
• Fastq Uploads
  I converted 2 fastq datasets, roughly 3 gb in size each. They have been queued up for about 24 ho...
• Single user Galaxy instance : job running for an unusually long time
  Hi,  I am testing a tool integration on my basic Galaxy instance. When I test the tool outside o...
• Bowtie2 jobs queued for over 24hours
  Hi, Are there currently any known issues with bowtie2? I've had a couple of jobs that were queue...
• Mapping Does Not Start
  Hi, I am trying to map sequences with Bowtie. Have been waiting for a few hours now but it still...