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• update drosophila genome to dm6
  The Drosophila genome has been updated to dm6. However, the Galaxy still only use dm3. Many gene ...
• Adding dm6 Drosophila reference genome
  Hello, I'm trying to analyze some Drosophila ChIP-seq data.  Since the deployment of dm6 on Flyb...
• Bedtools / FisherBed reference genome
  Hi, I was trying to run the FisherBed tool from the BedTools on the main galaxy server (usergalax...
• Fetching Promoters
  Hello, Is there a way to fetch the promoter regions for homologous genes from different species....
• D Mel Reference Genome For Mapping
  Dear Galaxy devs, Would it be possible to include drosophila Melanogaster (dm3) genome for mappin...
• Can't choose custom genome for bed files used in Stitch Gene Blocks
  I'm trying to extract and stitch maf blocks from the UCSC Drosophila alignment that uses the most...
• Problems displaying data when using Drosophila dm6 reference genome
  I have been trying to analyze data using the most recent Drosophila genome version (dm6). Despite...
• Analyzing ChIP-seq data from HiSeq 3000
  I have acquired ChIP-seq data from an Illumina HiSeq 3000. I have followed the analysis workflow ...
• Suggestions for variant callers/ problem with BCF view
  Samtools mpileup only outputs genotypes fields for samples when a BCF output is selected. The BCF...
• Getting Sequences For Multiple Species From Ucsc
  Hi all, I am wondering if there is a way to download sequence information from UCSC into Galaxy ...
• expression of transgenes
  I work with Drosophila transcriptome and sometimes I need to evaluate expression of artificial tr...
• cufflinks splicing analysis drosophila - 'notest' in output
  Hi everyone, I'm attempting to use cufflinks to examine alternative splicing in my RNAseq data f...
• Cufflinks error when trying to align against genome
  I am working with tophat2 and cufflinks in order to try to align RNA-seq reads against an assembl...
• Fetch alignments using stitch Gene Blocks but all the gene-sequences are in '--------'
  I was using the GALAXY project (https://usegalaxy.org/) online server, the section is Fetch align...
• pigtailed macaque reference genome
  Hello Will the pigtailed macaque genome be available in the reference genome list soon ? thanks ...
• getting a reference genome failed on a local galaxy instance
  I am trying to get a reference genome for drosophila in my local instance of galaxy using the Too...
• How do I get reference genome?
  There is no reference genome for leishmania in Bowtie2 tool - map reads against reference genome....
• Add reference genome
  Hi, Is it possible to add Arabdiopsis as reference genome to the build in set for the hisat2 pro...
• March 2011 Gmod Meeting: Registration Is Open
  Hello all, Registration is now open for the March 2011 GMOD Meeting ( http://gmod.oicr.on.ca/wik...
• type of file for reference genome
  i want to use a reference genome for tophat. Which type of file the galaxy will recognize?
• March 2011 Gmod Meeting Early Registration Closes This Friday
  Hello all, *Register for the March 2011 GMOD Meeting ( http://gmod.org/wiki/March_2011_GMOD_Meet...
• mycobacterium tuberculosis reference genome
  Hi,    Can we have mycobacterium tuberculosis H37rv genome in the reference genome list to map ...
• Help with interpreting RNA-seq output
  I am new to galaxy and have been trying to figure out how to align RNA-seq reads to a genome in o...
• Adding Reference genome of Chicken and Duck in Tophat
  Dear sir, Kindly add reference Genome of Chicken (Gallus gallus) and Duck (Anas platyrhynchos) in...