Question: Add reference genome
0
gravatar for sonja.warmerdam
13 months ago by
sonja.warmerdam0 wrote:

Hi,

Is it possible to add Arabdiopsis as reference genome to the build in set for the hisat2 programme

rna-seq • 337 views
ADD COMMENTlink modified 13 months ago by Jennifer Hillman Jackson25k • written 13 months ago by sonja.warmerdam0
0
gravatar for Jennifer Hillman Jackson
13 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

This is already planned for, please see: https://github.com/galaxyproject/galaxy/issues/1470#issuecomment-208444904

Meanwhile, load the genome in fasta format and use it as a custom genome/build with tools. https://galaxyproject.org/learn/custom-genomes/

If you want to use the same exact version of the fasta data as is indexed for other tools at https://usegalaxy.org (strongly recommended if you are already working there), it can be obtained from the Rsync server: https://galaxyproject.org/admin/use-galaxy-rsync/

Hope that helps! Jen, Galaxy team

ADD COMMENTlink written 13 months ago by Jennifer Hillman Jackson25k
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