I'm trying to download databases via admin by running data manager tools and I get an error message: Fatal error: Exit code 1 (Error) /bin/sh: humann2_databases: command not found Traceback (most recent call last): File "/Users/lplotta/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/data_manager_humann2_database_downloader/9244804f69a7/data_manager_humann2_database_downloader/data_manager/data_manager_humann2_download.py", line 170, in <module> target_dir) File "/Users/lplotta/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/data_manager_humann2_database_downloader/9244804f69a7/data_manager_humann2_database_downloader/data_manager/data_manager_humann2_download.py", line 119, in download_humann2_db subprocess.check_call(cmd, shell=True) File "/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/subprocess.py", line 186, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command 'humann2_databases --download chocophlan full /Users/lplotta/galaxy/database/jobs_directory/000/24/dataset_29_files/chocophlan --update-config no' returned non-zero exit status 127
This happens with both MetaPhlan2 and Humann databases. How can I fix it?
