Hi all, I am trying to run realign_target_creator in my local galaxy server and it is producing the following error:
Traceback (most recent call last):
File "/home/pk2/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/realigner_target_creator/5b8eaae854da/realigner_target_creator/gatk_wrapper.py", line 126, in <module>
if __name__=="__main__": __main__()
File "/home/pk2/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/realigner_target_creator/5b8eaae854da/realigner_target_creator/gatk_wrapper.py", line 90, in __main__
gatk_filename = gatk_filename_from_galaxy( filename, galaxy_ext, target_dir = tmp_dir, prefix = prefix )
File "/home/pk2/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/realigner_target_creator/5b8eaae854da/realigner_target_creator/gatk_wrapper.py", line 29, in gatk_filename_from_galaxy
os.symlink( galaxy_filename, gatk_filename )
OSError: [Errno 17] File exists
Does anyone knows how to solve it ??
I appreciate your help, thank you.