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• Add Reference Genome
  Hi All, We need Vicugna Pacos (http://asia.ensembl.org/Vicugna_pacos/Info/Index) added as a refe...
• Can a genome that's been released be added so I can map against it
  Hi there, I will be mapping my RNAseq reads to a genome of interests soon. Mapping with Bowtie2 ...
• Need to Expand Visualization
  Hello,  I recently used tophat2 to align two reads to the rn4 genome. I went through trackster...
• Adding dm6 Drosophila reference genome
  Hello, I'm trying to analyze some Drosophila ChIP-seq data.  Since the deployment of dm6 on Flyb...
• Adding reference genomes to local instance of Galaxy
  Hi, We have a local instance of Galaxy set up on our computing cluster. We would like to rsync t...
• Adding a reference genome to a local Galaxy
  Hoping to find some Galaxy Dev team experts. I am trying to add hg38 to the HiSat2 tool so that t...
• How To Add A Built-In Index For Tophat2?
  TopHat2 needs built-in index/ reference genome in order for it to run. I need to add hg 16 index ...
• Question About Building A Reference Genome Index Using Bowtie
  I am trying to compare two genetically different strains that I have sequenced using SOLiD. I wa...
• Galaxy Reference Genome
  Hello, Galaxy Main 1.) I am having trouble adding annotations to my Tophat and Cufflinks tools....
• Upload Genome Index To Galaxy For Bowtie Alignment?
  Hello, On the Galaxy web interface, the option to map sequences with Bowtie for Illumina reads i...
• Which reference to map against for RNA-Seq using HISAT2
  Hi all, I am trying to determine differential expression between two test conditions - in rat. T...