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• R job in galaxy
  Hello I am trying to run Rscript command in Galaxy. It run completely fine without error. But it...
• how to restart the local galaxy server without cancel the running jobs
  I set up a local galaxy server. And I am wondering that whether there is a way to restart the se...
• Cuffdiff does not produce an output file
  Hi, I am using Cuffdiff with Galaxy and even though the jobs show complete there are no output f...
• When will stampede be accessible through galaxy main?
  Hey guys, I just noticed that some tools allow the user to specify the computational resources f...
• Past Welcome Page Still Showing Up
  I'm new to Galaxy, and picking up on someone else's work with a local instance of Galaxy. So far ...
• Galaxy On One Computer Not Showing Latest Runs In History
  Hi I am running galaxy and am working both from home and work. Last night at home, my history had...
• CummRbund file format
  I am trying to run CummRbund after cufflink , but the erroe comes up nad shows there is no SQlite...
• Query Not Starting
  Hello, I am having problem with starting my query. For days it is showing "Job waiting to run". ...
• Data From History Now Showing Up In Fastq Drop Down
  Hi All, We have a galaxy local install. Thanks to Carlos's suggestion, I was able to get the ref...
• Data does not show up on Galaxy
  I uploaded 3 files to http://galaxy.genenetwork.org.  These files are showing up in my history.  ...
• CuffLinks/Server Running for a VERY Long Time
  I am currently analyzing RNA-seq data and running cufflinks. I originally started the Job in earl...
• FastQC job just keeps running without any output
  I just installed the latest Galaxy version 18.01 of Galaxy on a virtual machine running Ubuntu. F...
• Workflow not showing up
  I am trying to re-run some analysis with a different set of data. I have used specific shared wor...
• TopHat running since Saturday night
  Hi, A TopHat job keeps running since Saturday night. Similar jobs worked in 3 hours before this ...
• cufflink jobs in queue for 3 days
  Hello, I had set up a cufflink job saturday morning. I thought it may have been an error on my e...
• Galaxy update errors
  I have recently updated Galaxy to the latest release and I am having a couple of issues. 1. When...
• No queued jobs showed in the history after I ran a workflow
  Hi, I am running workflows for ChIP seq analysis. I tried to run the some workflows, however no ...
• Galaxy Source Code Revision Question
  Hello, When I clone the galaxy code from http://www.bx.psu.edu/hg/galaxy - which version am I ge...
• Jobs Waiting to Run
  Hello, I submitted a job using Lastz several hours ago and it still says "Job is waiting to run....
• Unicycler job has been waiting since Monday evening (11/27/2017). Am I doing anything incorrectly?
  So I have uploaded my sequence data as of Monday evening, as the title says, but the job has been...
• Galaxy API: Re-running job causes error
  Hello, I am using the galaxy API to rerun a tool doing a POST to /api/tools with action set to "...