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Question: Query Not Starting
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gravatar for Neel Aluru
5.6 years ago by
Neel Aluru • 20
Neel Aluru • 20 wrote:
Hello, I am having problem with starting my query. For days it is showing "Job waiting to run". Is the system backed up and there is a long queue? or is there a problem with my query? Normally if there is any problem it shows an error message. I am within the usage limits. I am trying to map my SOLiD data set to custom reference genome (fasta format). I converted the SOLiD output to fastq. Then I am using Map with Bowtie for SOLiD. Everything went fine quickly except the last step, which waiting for over 6 days now. Any help or suggestions appreciated. Thank you, Neel Neel Aluru Assistant Scientist Biology Department Redfield Building 3-04 Woods Hole Oceanographic Institution 45, Water Street Woods Hole, MA naluru@whoi.edu 508-289-3607 http://www.whoi.edu/page.do?pid=109916
alignment bowtie • 900 views
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modified 5.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 5.6 years ago by Neel Aluru • 20
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gravatar for Jennifer Hillman Jackson
5.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Neel, The public Main Galaxy instance is very busy, but I can let you know that I see your account in the queue in line for processing. The best option is to leave the job alone to process, and to not delete/re-run it. If you want to send me a link to your shared history, I would be glad to double check the situation. You can email direct to me. Thank you for your patience, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
ADD COMMENT • link written 5.6 years ago by Jennifer Hillman Jackson ♦ 25k
Hi Jen, Thank you for the reply. Yes, I noticed today that my queries are running. I apologize for deleting and re-running them. I thought something is wrong with my files and they are not working properly. I will be more patient from now on. Thanks, Neel -- Neel Aluru, Ph.D. Assistant Scientist Biology Department Woods Hole Oceanographic Institution Woods Hole 02543 MA USA Phone:508-289-3607 Fax:508-457-2134 http://www.whoi.edu/profile/naluru/
ADD REPLY • link written 5.5 years ago by Neel Aluru • 20
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