Question: Having issues uploading files into Galaxy
0
gravatar for nbhassou
3.1 years ago by
nbhassou • 10
United States
nbhassou • 10 wrote:

I am having issues uploading  FASTQ data files f into Galaxy usegalaxy.org). I get "tool error
An error occurred with this dataset:

failure preparing job" 

What am I doing wrong?

 

Thanks!

failure preparing job upload • 1.4k views
ADD COMMENT • link • modified 3.1 years ago • written 3.1 years ago by nbhassou • 10
0
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

These are the data loading instructions: https://wiki.galaxyproject.org/Support#Loading_data

If the data is over 2 GB in size, you just use the URL or FTP loading method. 

If the data is over 50 GB in size (uncompressed), then it exceeds the dataset size quota for upload. Local or cloud Galaxy use is recommended.

If the data is compressed (gz), consider trying to load these uncompressed since it can sometimes resolve the problems.

If the data is a compressed archive (tar.gz), then this will either fail or just the first file out of the archive will load. Instead, unpack it locally and load the files individually. This is very easy to do with FTP and a client like Filezilla.

Hopefully one of these helps to resolve the problem! Jen, Galaxy team

 

ADD COMMENT • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k

Hi Jennifer, The files each are less than 500 mb. They are uncompressed, and all are .fastq files. Not sure what else I can try?

ADD REPLY • link written 3.1 years ago by nbhassou • 10

Hi, 

I having the exact same problem when trying to upload small (8,5 Mo) uncompressed .bed files...

Any additional advice?

Thanks

Laurent

 

ADD REPLY • link written 3.1 years ago by laurent.pays • 0
0
gravatar for nbhassou
3.1 years ago by
nbhassou • 10
United States
nbhassou • 10 wrote:

Interestingly it worked this morning, although I did the exact same thing. 

ADD COMMENT • link written 3.1 years ago by nbhassou • 10

Glad it is working now. Perhaps the server was just really busy when you were having problems. Jen

ADD REPLY • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k
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