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• Link UCSC local genome browser with a local Galaxy instance
  Dear all, I am trying to link my local ucsc genome browser with my local Galaxy instance. I fin...
• Possible to host UCSC Genome Browser In Box on Cloud?
  Hi all I am able to run genome browser in box on my workstation and to access, I just have to ke...
• Problem with "get data" process.
  I am following a course in coursera, called Genomic Data Science with Galaxy. The problem comes ...
• View bam files on UCSC genome browser (Galaxy display application)
  Hello folks, I want to view BAM files on UCSC genome browser. I got my BAM files from HISAT2. Bu...
• Url File Upload... And File Upload Renamed
  1. How do I transfer files using the URL? As a test I wanted to transfer a file to my local inst...
• UCSC Genome Browser not loading VCF files
  Since 23 Feb I cannot view my VCF files on the UCSC Genome Browser. When I click on the Main link...
• No "local" option to view BAM files with IGV
  Hi I have BAM files loaded onto the main Galaxy server (usegalaxy.org) and I want to visualize t...
• How to configure genome in "Map with BWA" (existing tool) after adding it to my local section
  Hi. I have added the lines below to the section I made in config/tool_conf.xml file and "Map with...
• visulizion of peak from bamcomparei n UCSC
  I am using bamcompare in Galaxy for the first time to normalize the bam file of my chip.seq data....
• Fw: [Genome] Genome-Wide Dataset Of Protein Location Conversion
  Hello, We have been trying to determine a method to convert ChIP-Seq coordinates into a list o...
• Remove genomes from tool drop down menus
  I really hope someone can help. I have a local instance of Galaxy. I have genomes that appear in ...
• import data from filesystem into the library without copying it
  Under Admin I created a linked dataset for file > 2GB. The Galaxy message says "This job is r...
• Post Galaxy-Chip-Seq Analysis: Ucsc Genome Browser Can'T Read The Wig File
  Hello, I am using the Galaxy web tool to analyze ChIP-seq data. By applying MACS algorithm, the ...
• Use With Local Browser Mirror
  Hi all, Is it possible to customize Galaxy to use a mirror of the genome browser? Thanks, Keit...
• Link files from another disk to my local Galaxy instance
  I was trying to use the tool "Upload files from filesystem paths" to link some .fastq files to my...
• Data From History Now Showing Up In Fastq Drop Down
  Hi All, We have a galaxy local install. Thanks to Carlos's suggestion, I was able to get the ref...
• UCSC genome browser using galaxy
  Hi  I have been involved in a project related to SNP discovery in plant species. I was wondering...
• Link with "Open with IGV" and other things
  On the Galaxy in our local server, there is only link to Open with IGB but no link to Open with I...