Question: IOError: [Errno 13] Permission denied: compiled_templates/grid_base.mako.py
1
clijeron • 10 wrote:
Hello everyone,
My name is Carlos and I'm currently working for the City University of New York implementing Galaxy for biomedical research. I'm new to Galaxy and even Linux world, so please be patient.
After properly installing Galaxy and making the basic changes to the universe_wsgi.ini file, DNS, etc, I found an error when trying to load data libraries. I looked around but could not find the same exact problem or solution.
You can view the exact error message at the following URL:
http://galaxy.hunter.cuny.edu:8080/_debug/view/1410878278
Any ideas on how to resolve this issue ? Your help will be greatly appreciated.
Thank you!
CL
I think John's on the right track here, but I'd also add that running with debug=True should really never be done on a publicly exposed Galaxy server.
I had the same problem, and looked into
/mnt/galaxy/database/compiled_templates/library/common/:
total 400K
....
-rw--w--w- 1 galaxy galaxy 2.7K Oct 28 00:13 library_item_info.mako.py
-rw--w--w- 1 galaxy galaxy 2.4K Oct 28 00:13 library_item_info.mako.pyc
-rw-rw-rw- 1 galaxy galaxy 4.3K Oct 22 22:15 library_permissions.mako.py
-rw-rw-rw- 1 galaxy galaxy 4.0K Oct 22 22:15 library_permissions.mako.pyc
-rw--w--w- 1 root root 4.2K Oct 28 00:30 new_folder.mako.py
-rw--w--w- 1 root root 4.2K Oct 28 00:30 new_folder.mako.pyc
-rw--w--w- 1 root root 7.2K Oct 28 00:28 upload.mako.py
-rw--w--w- 1 root root 5.7K Oct 28 00:28 upload.mako.pyc
All were galaxy owner / group except the last few (which create the erroneous traceback during shared library load). Are they compiled after galaxy boots up for the first time ? I run it as a system service.
Once I've chown, chgrp these last ones to galaxy user, it works fine.