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• Need help with "Map with Bowtie for Illumina" tool - Methanosarcina acetivorans
  Hi there,  Would it be able to include "Methanosarcina acetivorans C2A" in the Reference Genome ...
• Need help with "Map with Bowtie for Illumina" tool
  How long will "This job is waiting to run" take?   Tool name: Map with Bowtie for Illumina Too...
• Need help with "Map with Bowtie for Illumina" tool
  Hi, I would like to map RNA-seq reads to the genome of banana. Is it possible to include it in th...
• Need help with "Map with BWA for Illumina" tool
  index   Tool name: Map with BWA for Illumina Tool version: 1.2.3 Tool ID: toolshed.g2.bx.psu.e...
• Need help with "Map with BWA for Illumina" tool
  biuld index   Tool name: Map with BWA for Illumina Tool version: 1.2.3 Tool ID: toolshed.g2.bx...
• Need help with "Map with BWA for Illumina" tool
  Why can't I import my fastq file from my history? I am in the history with all files - gDNA reads...
• Need help with "Map with BWA for Illumina" tool
   I don't know why the mapping procedure doesn't work.  My g-DNA sequence is fatsaq format, it can...
• Need help with "Map with BWA for Illumina" tool
  Hi,  I've been mapping this sample many times without any problem.  Now I'm trying to do the ex...
• Need help with "MPileup" tool
  I am trying to get SNPs and indels from a bowtie 2 on Illumina reads matched to the sinorhizobium...
• Need help with "Realigner Target Creator" tool
  Hi every one, If somebody familiar with using the GATK realigner target creator on galaxy? My d...
• Need help with "FASTQ Quality Trimmer" tool
  I am not able to add my file to this tool.     Tool name: FASTQ Quality Trimmer Tool version:...
• Need help with "Cufflinks" tool
      Tool name: Cufflinks Tool version: 0.0.7 Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/cuf...
• Need help with "FASTQ splitter" tool
  I was having difficulty with the FASTQ splitter, it was not finding my fastq file (an SRA-based F...
• Need help with "FASTQ Trimmer" tool
  FASTQ Trimmer seems unable to recognize my FASTQ files as input. For e.g. I carried out FASTQ to ...
• How to configure genome in "Map with BWA" (existing tool) after adding it to my local section
  Hi. I have added the lines below to the section I made in config/tool_conf.xml file and "Map with...
• Need help with "Tophat for Illumina" tool
  Dear All, Hello amazing Galaxy team members  now i have 14 manipulated fastq files 7 forward an...
• ChIP-seq mapping with Bowtie for Illumina 1.1.2
  Hi, I mapped my chip seq data with 'Map with Bowtie for Illumina 1.1.2' and used 'Filter SAM or ...
• Need help with "Tophat for Illumina" tool
  I do not know why: "RNA-Seq FASTQ file:" can not been selected?      Tool name: Tophat for Il...
• Need help with "Tophat2" tool
  Is there no yeast genome as a reference for using Tophat2 in Galaxy? I only found sc2 and sc3 it ...
• Need help with "Generate pileup" tool
  Dear, What kind of files should i use to "using reference genome" and where get it? I trying to...
• Need help with "Filter by quality" tool
  Why doesn't this tool recognize my fastq files? It won't let me run the tool on the fastq files I...
• Need help with "Variant Annotator" tool
    What is the meaning of this error" History does not include a dataset of the required format /...
• Need help with "Barcode Splitter" tool
  i uploaded a fastq file of the output from the sequencing but it is not recognized as a "library"...
• Need help with "Bowtie2" tool
  .fq file is saved in the history, but does not appear on the 'FASTQ File' dropdown list?   Too...