Enquiry Regarding The Working Of Galaxy

Question: Enquiry Regarding The Working Of Galaxy

4.7 years ago by

Sathya • 20

Sathya • 20 wrote:

Now the galaxy main server is not working. I would like to know how long it will take for galaxy to work again. -- With regards, Sathya.B

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modified 4.7 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.7 years ago by Sathya • 20

4.7 years ago by

Scott Tighe • 200

Scott Tighe • 200 wrote:

Seems to be down a lot these days...Maybe Dave could update us on the future of Galaxy. Scott Tighe Senior Core Laboratory Research Staff Advanced Genome Technologies Core NextGen Sequencing/Flow Cytometry University of Vermont and Vermont Cancer Center 149 Beaumont ave Health Science Research Facility 303/305 Burlington Vermont 05405 802-656-2482 (AGTC)

ADD COMMENT • link written 4.7 years ago by Scott Tighe • 200

4.7 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hi Sathya, The public Main Galaxy instance is down right now due to server issues. We anticipate this to be resolved by end of today. Please watch the messages at http://usegalaxy.org for updates. You can also follow Twitter at @galaxyproject, also posted on our wiki: https://wiki.galaxyproject.org/Galaxy%20on%20Twitter Thanks, Jen Galaxy team -- Jennifer Hillman-Jackson http://galaxyproject.org

ADD COMMENT • link written 4.7 years ago by Jennifer Hillman Jackson ♦ 25k

I am working on the project to predict SNP from NGS data. I have found SNP using SAM tools and GATK (used reference hg19). I would like to know effect of SNP using SNPeff in GALAXY. I have given SNP in vcf format. I could not change the genome option as human, it is set is C.elegans by default Please help me to solve this -- With regards, Sathya.B

ADD REPLY • link written 4.7 years ago by Sathya • 20

Hi Sathya, The SnpEff tool is set up at this time for annotation with the /C. elegans/ WS220 genome only. Including human in the future on the public Main server at http://usegalaxy.org is under current evaluation. For now, use the tool in a local or cloud Galaxy instance, with the tool installed from the Tool Shed. Help to get started can be found here: http://getgalaxy.org http://usegalaxy.org/cloud http://usegalaxy.org/toolshed Take care, Jen Galaxy team -- Jennifer Hillman-Jackson http://galaxyproject.org

ADD REPLY • link written 4.7 years ago by Jennifer Hillman Jackson ♦ 25k

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