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• How to find out how long each tool run on in galaxy
  Hello, How is is possible to find out in Galaxy how long each tool needed to run in the history?  
• Looping over a set of files
  In Galaxy is there a feature for looping over a set of files? For example, splitting a bam by chr...
• Trinity on Galaxy
  I was looking at various flavors of Galaxy on public servers, and came across a few that have Tri...
• Transpose For Tab-Delimited File?
  hi there! i'm very new to galaxy and it looks very cool. short version of my question: is ther...
• End Position of an alignment in BWA
  Hi, Does someone know if there is a way in galaxy to add a column in a dataset (for example a BW...
• Quality Report
  Hi, After obtaining a quality report in galaxy I found out that there is a difference between the...
• quantity of each replicate / id conversion
  Hi I need an information about the quantity of genes in each replicates how to do it I am using ...
• Galaxy storage issues
  Hi All, Despite purging my deleted datasets from each history, galaxy shows more usage space for...
• Macs
  Does anyone have advice on how to set the fdr threshold when using MACs in galaxy? Conversely, i...
• bam to stranded bigwig?
  Hi, I have a bam file generated from stranded RNA-seq data - is it possible to use galaxy to spli...
• TopHat not working
  My tophat in galaxy is not working. I try to use it to map to the reference human hg19 genome. Bu...
• Uploading fastq files
  Hi, This will be an easy one...when uploading fastq files to Galaxy is it important to associate...
• how to do FTP upload
  How can I upload the files to FTP server of Galaxy? I need to align two fastq files, which are 7 ...
• Running Trimmomatic on loop for Paired End
  I'm need to do trimming for Paired End. Is there any way around where I can run the trimmomatic ...
• Chip-Seq Normalization To Total Number Of Reads
  Dear Galaxy, I am trying to analyze my ChIP-Seq data from Illumina using Galaxy. I have 2 datase...
• larger Gb of fastq files in Galaxy
  I'm a new user to Galaxy and just now uploaded fastq files of illumina RNAseq via FTP. in my comp...