Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Clip Doesn'T See My Fastq File
0
gravatar for Stephen Eacker
6.0 years ago by
Stephen Eacker • 30
Stephen Eacker • 30 wrote:
Hello, I'm using Galaxy on the PSU server. I uploaded a FASTQ file that I want to run the Clip Adapter Tool, but this tool does not see my FASTQ file in the 'Library to clip' drop-down. I have successfully run FASTQC on this same file, so Galaxy does properly see this file as being a FASTQ file. Any thoughts? thanks, Steve Stephen Eacker, Ph.D. Research Associate Dawson Lab Institute for Cell Engineering Johns Hopkins Medical Institute (443) 287-5605 seacker1@jhmi.edu
galaxy • 873 views
ADD COMMENT • link •
modified 6.0 years ago by Jennifer Hillman Jackson ♦ 25k • written 6.0 years ago by Stephen Eacker • 30
0
gravatar for Jennifer Hillman Jackson
6.0 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Steve, Are you still having problems with this tool? And the datatype is assigned as ".fastq" or ".fastqsanger"? If you would like to send a shared link to the history, I can take a look and give feedback. From the history panel, use: Options (gear icon) -> Share or Publish - > generate a share link -> then copy that into a return email to just me (to keep your data private). Best, Jen Galaxy team -- Jennifer Jackson http://galaxyproject.org
ADD COMMENT • link written 6.0 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 180 users visited in the last hour