Question: Stdout And Stderr Files
0
Poornima Pochana • 20 wrote:
Hi,
I have a personal galaxy instance with the runner as SGE. I am able to
successfully submit jobs, and the output folder is created at
$file_path. But I see that the SGE job log files ie., stdout and
stderr - <job-name>.o and <job-name>.e are being removed in the
cleanup function in sge.py. Is this right? Is galaxy capturing the
jobs stdout and stderr some where else?
Also when I click on the link Tool Standard Output from galaxy web
interface, it returns empty. Is there a setting that I should have to
view jobs stdout, stderr from the web interface?
Thanks,
Poornima.
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modified 6.5 years ago
by
Scott McManus • 130
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written
6.5 years ago by
Poornima Pochana • 20