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Question: Job Output Not Returned From Cluster
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gravatar for Erick Antezana
8.5 years ago by
Erick Antezana • 570
Erick Antezana • 570 wrote:
Hi, I came across the following error message sometime ago while launching some jobs on our SGE cluster via our Galaxy instance: "Job output not returned from cluster" I remember we fixed somehow that issue but I couldn't find back any reply/tips in the galaxy mailing list archive. Does anybody have any hints? It seems that in my SGE config file something is missing about the output and error log files (as suggested by the sge.py script)? Actually, the job is executed in the cluster without any problems. I can even look at the result by clicking on the 'eye' icon; however, in the history panel, the result appears in a red box (not green as expected)... cheers, Erick
galaxy • 980 views
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modified 8.5 years ago • written 8.5 years ago by Erick Antezana • 570
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gravatar for Erick Antezana
8.5 years ago by
Erick Antezana • 570
Erick Antezana • 570 wrote:
problem fixed ;-) (it was an issue at the SGE config level...)
ADD COMMENT • link written 8.5 years ago by Erick Antezana • 570

Hi,

I hope you still follow the Galaxy Biostar forum (fingers crossed). I get the same error but no answer to my question since it is a very specific subject. Do you remember what was the issue in your sge configuration ?

F.T

ADD REPLY • link written 3.1 years ago by FT • 0
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