Question: Cuffmerge - "Use Sequence" Option.
0
Mohammad Heydarian • 100 wrote:
Hi,
Can anyone shed light on what the "use sequence" parameter (Y/N) in
Cuffmerge is doing? The Cuffflinks manual says:
-s/--ref-sequence <seq_dir>/<seq_fasta> This argument should point to
the
genomic DNA sequences for the reference.
When "no" is chosen for the "use sequence" option I still get genomic
coordinates for each entry. Also, when "no" is chosen, I get less
entries
than when "yes" is chosen.
Any insight would be greatly appreciated.
Have a great day.
Cheers,
Mo Heydarian
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modified 6.6 years ago
by
Jeremy Goecks • 2.2k
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written
6.6 years ago by
Mohammad Heydarian • 100
