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• MetaPhIan2 does not produce results, while MetaPhIan does
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• How to convert Bed, or GFF3 files to fasta?
  Hello everyone, i am new to the bioinformatic world, and i am trying to do a phylogeny with a gen...
• Bam Format
  Dear all, I downloaded a file in .BAM format and want to transform it into .BED format. What can...
• Galaxy -- use of MinION data to convert FastQ to FastA
  Hello, I have FastQ data from the MinION and I am having troubles converting these FastQ files to...
• Bedgraph Format
  Dear all: I want to transform a text file to BedGraph format and show it on UCSC genome browse...
• Bowtie Alignment
  Hello, I am trying to map my Illumina reads to the mouse genome using specific Bowtie criteria. ...
• Error on mapping: my sliced sequence (for a certain gene) gets mapped 3mb away.
  I've sliced my original BAM files to my region of interest, and then transformed the sliced files...
• Cufflinks Analysis Using .Bam Files Generated By Lifescope (Abi 5500 Sequencer)
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• Question: SAM-to-BAM: fatal exit code Error 139
  Dear All, I am analyzing DNAseq data. I obtained a SAM file by using "Map with BWA for Illumina ...
• FASTQ files in history but cannot add to tasks like FASTQ trimmer or TopHat2
  I am a new user and uploaded to large FASTQ files which galaxy recognises as FASTQ files. However...
• uploading fastq in galaxy
  sorry guys, i am in ribo-galaxy now,i created account already...in get data part no option to up...
• TopHat from Galaxy local instance do not recognize available fastq files.
  Hi there, I am probably missing something obvious here. My local Galaxy TopHat does not recogniz...
• Uploading fastq files keeps failing
  I am trying to upload fastq files from my computer to galaxy and the upload keeps failing. After...
• Selecting Reads At Random From Fastq File
  Hi, I am curious if anyone knows how to select random lines from a fastq file. There is a select...
• Using BWA-MEM to align fastq files from MinION
  I am trying to use BWA-MEM in Galaxy to align fastq files to mouse genome. I am having an issue w...
• Galaxy Cloud: Location Of Imported And Converted Fastq'S
  Hi, I had fastq.gz files in an Amazon S3 bucket. I created a Galaxy on the Cloud instance usin...
• Help with interpreting RNA-seq output
  I am new to galaxy and have been trying to figure out how to align RNA-seq reads to a genome in o...
• Upload fastq to 'Data Libraries' Using Bioblend Python library
  Hello , I am a Developer from INDIA , I am using the galaxy API to create a library,upload fast f...