I am a new user and uploaded to large FASTQ files which galaxy recognises as FASTQ files. However when I go to the FASTQ Trimmer or TopHat2, those files are not available from the drop down menu and I don't know why. I have added a database to the files (TAIR10) but still I cannot select them. I am sure it is something simple I am missing but as I am new help would be appreciated.
Thanks.