Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: how to give Snpeff inputs (Non-coding and regulatory annotation)
0
gravatar for v4savaishnavi
6 months ago by
v4savaishnavi • 30
v4savaishnavi • 30 wrote:

Hi,

I am trying to annotate variants among Solanum lycopersicum leaf curl mutants using SnpEff eff. But I am not able to give inputs that is; non coding and regulatory annotation. Please provide any guidance to me regarding this query. Thanks in advance.
snpeff snp vcf galaxy annotate • 461 views
ADD COMMENT • link •
modified 6 months ago by Jennifer Hillman Jackson ♦ 25k • written 6 months ago by v4savaishnavi • 30
0
gravatar for Jennifer Hillman Jackson
6 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

To annotate a VCF with an annotation that is not included in the SnpEff indexes, try using alternative tools.

Please see this prior post for details: https://biostar.usegalaxy.org/p/28108/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 6 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 178 users visited in the last hour