Similar posts • Search »

• SacCer3 reference genome for SnpEff
  I saw that there was a ticket made in Trello (15 months ago) to add the SacCer3 reference genome ...
• Using the S. cerevisiae (sacCer3) reference genome with snpEff
  Hello- I'm trying to using snpEff to analyze the effects of SNPs and Indels on yeast protein cod...
• Database Of C_Briggsae_Ws230 For Snpeff
  Hi, Using SnpEff in the Galaxy main server, I need the Caenorhabditis briggsae genome as a refer...
• How to preprocess .fasta genome reference, .gff3 annotation file and the input VCF to escape from the Frame Zero error with SNPEff?
  How to preprocess .fasta genome reference, .gff3 annotation file and the input VCF to escape from...
• Genome source from history in SnpEff
  Hello, I am using SnpEff in Galaxy to add variant information to my vcf file. Please let me ask 2...
• Need help with "SnpEff" tool
      Tool name: SnpEff Tool version: 1.0 Tool ID: toolshed.g2.bx.psu.edu/repos/pcingola/snpeff/...
• SnpEff custom genome data in Galaxy
  Hello, I'm trying to use Galaxy to run SnpEff eff with a custom database I prepared with SnpEff v...
• SNPeff error SSL ?
  Hello here, I want to install SNPeff on my local instance. Unfortunately SNPeff download for ref...
• SnpEff variant annotation
  Hello! I am trying to annotate variants (Human genome) by SnpEff annotate variants (Galaxy Versi...
• Support For Other Genomes In Snpeff
  Hello, My name is Diego and am currently trying to use SNPeff to annotate some variants called fr...
• SnpEff error and problems downloading genome
  Running SnpEff generates the following error: Fatal error: Exit code 1 (Error) Picked up _JAVA_OP...
• SnpEff database build tool for C.elegans
  I am trying to use the SnpEff build database tool to build reference genome for C.elegans and use...
• Snpeff On Human Genome
  Hi, Is it possible to use SNPeff with genomes other than worm. This seems to be the only option...
• What genome annotation software is available in Galaxy except SNPEff and ANNOVAR?
  What genome annotation software is available in Galaxy except SNPEff and ANNOVAR?
• SnpEff (Galaxy) troubleshoot
  I have got Mpileup data. I wish to further understand SNP effect using snpeff. Unfortunately, in ...
• Need help with "SnpEff" tool
  Hi there, I'm trying to run SnpEff on Galaxy, but the only Genome that it gives me access to is ...
• SnpEff supports only genomes of two species?
  Under usegalaxy, I was trying to use SnpEff to annotate my VCF, but the genome dropdown list show...
• When running SNPEff on Galaxy on the normalized with VT tools VCF with M. Tuberculosis genome we have: WARNING: Chromosome 'gi|559794742|gb|CP003248.2|' not found
  When running SNPEff on Galaxy on the normalized with VT tools VCF with M. Tuberculosis reference ...