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• where is ceas tools?
  why can not I find CEAS tool in Galaxy now? I want to perform the analysis.
• Description of all the tools
  where can i find a description of all tools in Galaxy and what they do?
• Where is tophat2
  Hi, I had been using one of the TopHat tools this week. Today, if I search for it, I can no longe...
• Create a BedGraph of genome coverage
  Hello! Excuse me, where can I find "Create a BedGraph of genome coverage" tool?
• Cufflinks Version
  What version of cufflinks is available on the galaxy site? Is there any page where I can find ve...
• Fastq Manipulation Tools In Galaxy
  I looked for the Fastq manipulation tools in Galaxy (public web site) but I could not find them....
• location of tool after installed from toolshed
  Hi, Do you know where I can find the actual script(python) of the tool that I installed from too...
• where do i find fetch taxonomic representation
  where do i find fetch taxonomic representation, under metagenomic analysis to get phylogeny.
• Where in the galaxy folders can I find the python wrappers? please be specific
  May you please tell me which folder in the Galaxy-dist folders where the wrappers are? how do I ...
• Default Global Variables In Galaxy
  Hi there, Can anyone tell where I can find a description of the default global variables in Gala...
• Galaxy toolshed information
  I want to import some tools from galaxy toolshed but not able to sort out how, though I have read...
• where to find cutadapt tool version / where to find the lastest tool
  Hi. When I searched for "cutadapt" here https://toolshed.g2.bx.psu.edu/ I see one result that "In...
• Where can I find the FastQC tool on the Galaxy webpage?
  Hi,  I am attempting to recreate an RNA Seq differential expression analysis of a previously pub...
• How to Contact Repository Owners
  I'm having trouble finding the option to contact repository owners; when I click into a tool, the...
• Fetches taxonomic representation option
  Dear all, I want run "Fetches taxonomic representation and draw phylogeny tree" software for my ...
• Filter data on any column using "simple" expressions
  In the "Filter data on any column using simple expressions" is there a "does not equal" operator?...
• local galaxy not finding some tools installed from toolshed
  I am having an issue with some of the tools in my local galaxy. I can download and run some tools...
• Data Files For Gencode Partition Tool
  Hello! I tried asking this at the galaxy-dev list a while back, but figure it might more righ...
• About CHIP Seq Data Download
  Hello, I am a new learner in bioinformatics tools and want to learn how analyze chip seq data in ...
• Define A Path For The Command Files
  Hi everybody, I am integrating a new tool which depends on several other libraries (part of th...
• How to update the tool menu
  Sometimes I want to move tools around within the tool list/menu that appears in the left hand col...
• Taxbuilder Executable
  taxonomy/gi2taxonomy.py gives me this error: /bin/sh: taxBuilder: command not found what is thi...
• How to Use new Data Library Beta tool
  I see that the beta data library tool has gained some features recently. I tried to use the From...
• adding tophat2 to galaxy
  I have an online account in galaxy where i am trying to work with an example dataset. I can see t...