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• Help with paths
  Hi all, I have problems understanding how environment variables are used/modified in galaxy. I ...
• Galaxy Environment variables - can I access DEBUG value from my tool?
  Hi, I couldn't find information about the environment variables that are set when Galaxy runs. I...
• Running tests for my tools.xml
  It's not clear to me how I can run the `` for the tools.xml I've created. My tools require an en...
• Adding custom tools: newbie
  Hi all, I'm learning how to create wrap a java program in my galaxy instance: <?xml version=...
• "Analyses of metagenomics data - The global picture"-tutorial
  Hi, I'm doing the tutorial "Analyses of metagenomics data - The global picture", and are supposed...
• Setting Default Access Permission For Datasets And Histories
  Dear galaxy team, The possibility of setting default dataset/history permission (e.g. "Change de...
• Renaming Dataset In Workflow
  Is it possible when renaming a dataset in a workflow to have it fill in the dataset number like t...
• Integrate pipeline (set of custom tools) into Galaxy
  I have created a set of apps for running a pipeline. The individual apps can be started from the ...
• Conditional Output Dependent on Conditional Input
  Hi everyone, I am looking to create a tool which imports files from a filesystem I have installed...
• Custom Tool Output Path
  Hi all, For custom tools, I was wondering how the output path can be set in the xml file describi...
• Help Need In Troubleshooting Cufflinks
  Hi Team, This is Vijay from ELogic Technologies Pvt Ltd, Bangalore, India. 1. Using Galaxy loca...
• How To Determine Version Of Galaxy From Main Page
  Hi folks, I've researched this in the new global Google Search tool http://galaxy.psu.edu/search...
• custom tool and text file
  Hello everyone: I am working on local instance of galaxy . My tool runs the bash script which ne...
• Can Remote_User Be Changed To Another Header Variable?
  Hi, We have a SSO environment provided by Oracle Fusion products and for some reason, they don't...
• align.seq mothur error
  Hi. i am new to galaxy. i'm trying to align my NGS samples based on galaxy 16s Microbial Analysis...
• Cluster Install - Trouble Finding Drmaa Egg
  I'm trying to install Galaxy on our SGE cluster (using the Unified method). I installed galaxy-d...
• Storing Environment Variables for Predefined Environment Variables
  I am trying to create an environment variable of which will be stored in env.sh for an environmen...