Question: unable to use picrust
0
gravatar for shubha.micro
7 months ago by
shubha.micro0 wrote:

unable to execute picrust even for sample file given in the site. It gives an error message as follows for all the file strong text Fatal error: Exit code 1 () Traceback (most recent call last): File "/home/galaxy/galaxy/tools/picrust_galaxy/normalize_by_copy_number.py", line 132, in <module> main() File "/home/galaxy/galaxy/tools/picrust_galaxy/normalize_by_copy_number.py", line 85, in main count_table = convert_precalc_to_biom(count_table_fh, ids_to_load) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/picrust/util.py", line 101, in convert_precalc_to_biom raise ValueError,"One or more OTU ids were not found in the precalculated file!\nAre you using the correct --gg_version?\nExample of (the {0}) unknown OTU ids: {1}".format(len(ids_to_load),', '.join(list(ids_to_load)[:5])) ValueError: One or more OTU ids were not found in the precalculated file! Are you using the correct --gg_version?

ADD COMMENTlink modified 7 months ago by Jennifer Hillman Jackson25k • written 7 months ago by shubha.micro0
0
gravatar for Jennifer Hillman Jackson
7 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The error indicates a data input problem, possibly a genome mismatch problem.

ValueError: One or more OTU ids were not found in the precalculated file! Are you using the correct --gg_version?

Please see the general usage troubleshooting help here to double check your inputs, including content: https://galaxyproject.org/support/

Galaxy tutorials: https://galaxyproject.org/learn/

Related Q&A: https://biostar.usegalaxy.org/p/18622/

Thanks, Jen, Galaxy team

ADD COMMENTlink written 7 months ago by Jennifer Hillman Jackson25k
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