unable to execute picrust even for sample file given in the site. It gives an error message as follows for all the file strong text Fatal error: Exit code 1 () Traceback (most recent call last): File "/home/galaxy/galaxy/tools/picrust_galaxy/normalize_by_copy_number.py", line 132, in <module> main() File "/home/galaxy/galaxy/tools/picrust_galaxy/normalize_by_copy_number.py", line 85, in main count_table = convert_precalc_to_biom(count_table_fh, ids_to_load) File "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/picrust/util.py", line 101, in convert_precalc_to_biom raise ValueError,"One or more OTU ids were not found in the precalculated file!\nAre you using the correct --gg_version?\nExample of (the {0}) unknown OTU ids: {1}".format(len(ids_to_load),', '.join(list(ids_to_load)[:5])) ValueError: One or more OTU ids were not found in the precalculated file! Are you using the correct --gg_version?
Heads up! This is a static archive of our support site. Please go to help.galaxyproject.org if you want to reach the Galaxy community. If you want to search this archive visit the Galaxy Hub search
Question: unable to use picrust
0
shubha.micro • 0 wrote:
ADD COMMENT
• link
•
modified 7 months ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
7 months ago by
shubha.micro • 0
0
Jennifer Hillman Jackson ♦ 25k wrote:
Hello,
The error indicates a data input problem, possibly a genome mismatch problem.
ValueError: One or more OTU ids were not found in the precalculated file! Are you using the correct --gg_version?
Please see the general usage troubleshooting help here to double check your inputs, including content: https://galaxyproject.org/support/
Galaxy tutorials: https://galaxyproject.org/learn/
Related Q&A: https://biostar.usegalaxy.org/p/18622/
Thanks, Jen, Galaxy team
Please log in to add an answer.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 16.09
Traffic: 183 users visited in the last hour