MultiQC not recognising data set collection - Fix implemented at usegalaxy.org

Question: MultiQC not recognising data set collection - Fix implemented at usegalaxy.org

12 months ago by

Taamslab • 0 wrote:

Attempting to run multiqc on a list of dataset pairs from an RNA seq experiment. However it does not recognise the txt dataset collection.

is there anyway around this?

fastqc multiqc • 571 views

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modified 12 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by Taamslab • 0

12 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The fix for this problem has been made (https://github.com/galaxyproject/galaxy/issues/5040) and will be applied to the Galaxy Main server very soon (likely today). I'll write back with an update once applied and tested.

Thanks for reporting the problem! Jen, Galaxy team

ADD COMMENT • link written 12 months ago by Jennifer Hillman Jackson ♦ 25k

12 months ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Update 12-01-17 2pm EST

Galaxy Main at https://usegalaxy.org has been updated.

Please rerun your job and let us know if problems continue. We are also testing today for a few bug fixes and will report back if any issues are still present.

Thanks! Jen, Galaxy team

ADD COMMENT • link written 12 months ago by Jennifer Hillman Jackson ♦ 25k

Hi,

I'm trying to do a similar quality check on a collection of dataset pairs (4 samples, each with F and R read sequence files- 8 files total). FastQC accepted the collection and output two collections: one for raw data and one for webpages, and manual inspections makes it seem like it worked. However, multiQC does not recognize either FastQC-output collections in the results file field ('collections' icon selected). It just says, "No txt or tabular dataset collections available."

Am I doing something wrong, or is this the same bug as in the OP?

ADD REPLY • link written 11 months ago by cwg • 0

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