Question: Error At Galaxy
0
gravatar for Ross Hardison
12.8 years ago by
Ross Hardison270
United States
Ross Hardison270 wrote:
This occurred while getting phastOdds scores: exceptions.ValueError at /history I/O operation on closed file Python /usr/lib/python2.4/cgi.py in __getattr__, line 541 Web GET http://test.g2.bx.psu.edu/history Traceback (innermost first) /usr/lib/python2.4/cgi.py in __getattr__ self.file.seek(0) ... ▶ Local vars /usr/lib/python2.4/cgi.py in __repr__ return "FieldStorage(%r, %r, %r)" % ( ... ▶ Local vars /var/opt/universe/trunk-test/modules/Cheetah/Filters.py in filter filtered = str(val) ... ▶ Local vars in respond ▶ Local vars /var/opt/universe/trunk-test/galaxy/interfaces/common.py in fill_template return str(template) ... ▶ Local vars /var/opt/universe/trunk-test/galaxy/interfaces/root.py in history return self.fill_template(template, history=history, mode=mode ) ... ▶ Local vars build/bdist.cygwin-1.5.12-i686/egg/cherrypy/_cphttptools.py in main ▶ Local vars build/bdist.cygwin-1.5.12-i686/egg/cherrypy/_cphttptools.py in run ▶ Local vars Response so far HEADERS Date: Sat, 25 Feb 2006 18:52:04 GMT Set-Cookie: [] Content-Length: Content-Type: text/html Server: CherryPy/2.1.1 BODY Request information INPUT No input data. COOKIES Variable Value universe Set-Cookie: universe=6488ab1b7e827b13fd5e85de2ef78ab7; session Set-Cookie: session=2e41ce0777a1fcf0a6a2f9019dbec55f95e37934; universe_prefs Set-Cookie: universe_prefs=three; universe_ui Set-Cookie: universe_ui=info66;
galaxy • 827 views
ADD COMMENTlink modified 12.8 years ago by Istvan Albert250 • written 12.8 years ago by Ross Hardison270
0
gravatar for Istvan Albert
12.8 years ago by
Istvan Albert250
University Park
Istvan Albert250 wrote:
Do you happen to have the file (or recall the steps) that caused this error? (It is a very strange error for both the location of where it happens and the reason it gives back) Istvan. -- Istvan Albert, Research Associate, Bioinformatics Consulting Center, Huck Institute for Life Sciences, Pennsylvania State University http://www.personal.psu.edu/iua1
ADD COMMENTlink written 12.8 years ago by Istvan Albert250
I did not find the ultimate cause but I found the symptom for the history not rendering properly. For one the results the dbkey got overwritten from being a string to the actual universe instance (ouch!). I'll be able to fix the the reason the history fails to render, for now with a simple fix but we need to make it so that eventually the history renders no matter what errors it might contain. -- Istvan Albert, Research Associate, Bioinformatics Consulting Center, Huck Institute for Life Sciences, Pennsylvania State University http://www.personal.psu.edu/iua1
ADD REPLYlink written 12.8 years ago by Istvan Albert250
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