Question: Newbie wanting to align Ion Torrent PGM data to mitochondrial DNA template
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mpugh • 0 wrote:
I have three large .fastaq files for an Ion Torrent PGM analysis for three species of tuna. I want to align them against a mtDNA template for tuna. I have looked at the Galaxy tutorial but it does not address what I want to. I have done the FastQC runs and for the most part they look good. My understanding is that I am to trim the segments- I am presuming that means the adapters and barcodes, and/or the larger pieces (>200 bases), or something else? I would appreciate any advice, a link to a tutorial, or whatever one feels necessary for me to accomplish my goal. I thank all in advance. Sincerely, Michael Eugene Pugh visiting scientist VA Institute of Marine Science mepugh@vims.edu
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modified 17 months ago
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Jennifer Hillman Jackson ♦ 25k
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17 months ago by
mpugh • 0
